Archive:: Computational Biology and Bioinformatics:: Science Publishing Group

Volume 3, Issue 1, February 2015

Protein Function Prediction Using Neighbor Counting with Dynamic Threshold from Protein-Protein Interaction Network

Md. Khaled Ben Islam, Julia Rahman, Md. Al Mehedi Hasan, Mohammed Nasser

Issue: Volume 3, Issue 1, February 2015

Pages: 1-5

Received: 10 January 2015

Accepted: 26 January 2015

Published: 2 February 2015

DOI: 10.11648/j.cbb.20150301.11

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Abstract: In recent years, a large number of proteins of different organisms have been discovered but due to high experimental cost and uncertain time boundary, yet it is not possible to find out all of the functionalities of those proteins. With the recent advent of huge protein-protein interactions, it becomes an opportunity to computationally predict a pr... Show More

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In-Silico Evaluation of the Capsid Proteins of FMDV as Potential Vaccine Candidates

F. M. N. Hassan, Md. Shaifur Rahman, K. M. T. Rahman, Sharmin S. Sumi, Md. F. Islam, Md. Badrul Alam, Md. Giasuddin, Khondoker M. Hossain

Issue: Volume 3, Issue 1, February 2015

Pages: 6-20

Received: 23 November 2014

Accepted: 2 March 2015

Published: 9 March 2015

DOI: 10.11648/j.cbb.20150301.12

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Abstract: In this study, the capsid proteins of four major serotypes of Foot and Mouth Disease Virus (FMDV) were assessed as the vaccine candidates. Different protein sequences regarding FMDV capsid of O, A, Asia 1 and C type were identified from NCBI Genome Database and UniprotKB. Phylogenetic tree of the four serotypes was developed using ClustalW software... Show More

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